STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113011369Protein tyrosine phosphatase receptor type Sa. (1529 aa)    
Predicted Functional Partners:
IL1RAP
Interleukin 1 receptor accessory protein.
    
 0.858
ENSACLP00000027049
SLIT and NTRK-like family, member 2.
    
 0.801
LOC113026243
Tyrosine-protein kinase receptor.
   
 0.798
ntrk3
Tyrosine-protein kinase receptor.
   
 0.798
SLITRK1
SLIT and NTRK like family member 1.
    
 0.797
ctnnb1
Catenin (cadherin-associated protein), beta 1.
   
 0.724
lrfn5
Leucine rich repeat and fibronectin type III domain containing 5a.
    
 0.709
LOC113006909
Leucine rich repeat and fibronectin type III domain containing 5b.
    
 0.709
ENSACLP00000002257
Neurotrophic tyrosine kinase, receptor, type 2b.
    
 0.703
ENSACLP00000002416
Tyrosine-protein kinase receptor.
    
 0.703
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.