STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
meiocUncharacterized protein. (775 aa)    
Predicted Functional Partners:
YTHDC2
YTH domain containing 2.
    
 
 0.674
LOC113029849
REC8 meiotic recombination protein b.
     
 0.630
rad21
RAD21 cohesin complex component a.
     
 0.625
SYDE1
Synapse defective Rho GTPase homolog 1.
      
 0.537
ENSACLP00000023961
Uncharacterized protein.
      
 0.491
ythdc1
YTH domain containing 1.
    
 
 0.491
rbm46
RNA binding motif protein 46.
      
 0.468
xrn1
5'-3' exoribonuclease 1.
    
 
 0.467
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.