LOC113024488 protein (Astatotilapia calliptera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC113024488

Thyroid hormone receptor interactor 10b. (508 aa)

Predicted Functional Partners:

LOC113022989

0.960

LOC113008847

0.899

LOC113026240

0.899

ENSACLP00000023566

0.893

rhoq

0.893

nckipsd

0.823

ENSACLP00000012866

0.817

ENSACLP00000012873

0.817

ENSACLP00000014175

0.817

LOC113015068

0.807

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000012866	ENSACLP00000012873	ENSACLP00000012866	ENSACLP00000012873	Uncharacterized protein.	SH3 domain-containing protein.	0.854
ENSACLP00000012866	ENSACLP00000014175	ENSACLP00000012866	ENSACLP00000014175	Uncharacterized protein.	Intersectin 2b.	0.854
ENSACLP00000012866	ENSACLP00000023566	ENSACLP00000012866	ENSACLP00000023566	Uncharacterized protein.	Ras homolog family member H.	0.846
ENSACLP00000012866	LOC113008847	ENSACLP00000012866	ENSACLP00000000294	Uncharacterized protein.	Uncharacterized protein.	0.942
ENSACLP00000012866	LOC113015068	ENSACLP00000012866	ENSACLP00000023023	Uncharacterized protein.	Cell division cycle 42, like.	0.846
ENSACLP00000012866	LOC113022989	ENSACLP00000012866	ENSACLP00000036531	Uncharacterized protein.	Cell division cycle 42.	0.885
ENSACLP00000012866	LOC113024488	ENSACLP00000012866	ENSACLP00000005157	Uncharacterized protein.	Thyroid hormone receptor interactor 10b.	0.817
ENSACLP00000012866	LOC113026240	ENSACLP00000012866	ENSACLP00000021613	Uncharacterized protein.	WASP like actin nucleation promoting factor a.	0.942
ENSACLP00000012866	nckipsd	ENSACLP00000012866	ENSACLP00000031381	Uncharacterized protein.	NCK interacting protein with SH3 domain.	0.835
ENSACLP00000012866	rhoq	ENSACLP00000012866	ENSACLP00000024975	Uncharacterized protein.	Ras homolog family member Q.	0.846
ENSACLP00000012873	ENSACLP00000012866	ENSACLP00000012873	ENSACLP00000012866	SH3 domain-containing protein.	Uncharacterized protein.	0.854
ENSACLP00000012873	ENSACLP00000014175	ENSACLP00000012873	ENSACLP00000014175	SH3 domain-containing protein.	Intersectin 2b.	0.854
ENSACLP00000012873	ENSACLP00000023566	ENSACLP00000012873	ENSACLP00000023566	SH3 domain-containing protein.	Ras homolog family member H.	0.846
ENSACLP00000012873	LOC113008847	ENSACLP00000012873	ENSACLP00000000294	SH3 domain-containing protein.	Uncharacterized protein.	0.942
ENSACLP00000012873	LOC113015068	ENSACLP00000012873	ENSACLP00000023023	SH3 domain-containing protein.	Cell division cycle 42, like.	0.846
ENSACLP00000012873	LOC113022989	ENSACLP00000012873	ENSACLP00000036531	SH3 domain-containing protein.	Cell division cycle 42.	0.885
ENSACLP00000012873	LOC113024488	ENSACLP00000012873	ENSACLP00000005157	SH3 domain-containing protein.	Thyroid hormone receptor interactor 10b.	0.817
ENSACLP00000012873	LOC113026240	ENSACLP00000012873	ENSACLP00000021613	SH3 domain-containing protein.	WASP like actin nucleation promoting factor a.	0.942
ENSACLP00000012873	nckipsd	ENSACLP00000012873	ENSACLP00000031381	SH3 domain-containing protein.	NCK interacting protein with SH3 domain.	0.835
ENSACLP00000012873	rhoq	ENSACLP00000012873	ENSACLP00000024975	SH3 domain-containing protein.	Ras homolog family member Q.	0.846