STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113032258C-type lectin domain-containing protein. (296 aa)    
Predicted Functional Partners:
LOC113019244
Matrin-type domain-containing protein.
  
 
  0.536
LOC113034001
Uncharacterized protein.
  
 
  0.459
LOC113023033
Uncharacterized protein.
  
 
  0.451
LOC113018713
Uncharacterized protein.
    
  0.449
LOC113033543
Tenascin C.
    
  0.449
ENSACLP00000016379
Uncharacterized protein.
    
  0.449
tnr
Tenascin R (restrictin, janusin).
    
  0.449
LOC113025456
Zmp:0000000846.
    
  0.449
ENSACLP00000039531
Fibronectin type-III domain-containing protein.
    
  0.449
tnn
Tenascin N.
    
  0.449
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.