STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000005197Uncharacterized protein. (126 aa)    
Predicted Functional Partners:
ENSACLP00000000506
LEM domain-containing protein.
    
 0.979
lemd3
LEM domain containing 3.
   
 0.877
ENSACLP00000029473
Ankyrin repeat and LEM domain containing 2.
    
 0.843
lmnb2
Lamin B2; Belongs to the intermediate filament family.
   
 0.839
LOC113014939
Uncharacterized protein; Belongs to the intermediate filament family.
   
 0.825
lmna
Lamin A; Belongs to the intermediate filament family.
   
 0.825
ENSACLP00000038320
IF rod domain-containing protein; Belongs to the intermediate filament family.
   
 0.825
ENSACLP00000038334
IF rod domain-containing protein; Belongs to the intermediate filament family.
   
 0.825
vrk1
VRK serine/threonine kinase 1; Belongs to the protein kinase superfamily.
    
 0.808
LOC113035239
VRK serine/threonine kinase 2.
    
 0.808
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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