STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC113021326Homeobox B2a. (433 aa)    
Predicted Functional Partners:
ENSACLP00000035265
Homeobox B5b.
   
 
 0.749
pknox1
Pbx/knotted 1 homeobox 1.1.
    
 0.710
rchy1
Ring finger and CHY zinc finger domain containing 1.
    
 
 0.696
LOC113021319
Homeobox domain-containing protein.
   
 
 0.694
hoxa5
Homeobox A5a.
   
 
 0.686
hoxd10
Homeobox D10a.
   
 
 0.671
snai2
Snail family zinc finger 2.
      
 0.623
LOC113036832
Myeloid ecotropic viral integration site 3.
    
 0.608
LOC113033175
ISL LIM homeobox 1.
    
 0.600
LOC113031962
Pre-B-cell leukemia homeobox 2.
    
 0.599
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.