Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gabpaGA binding protein transcription factor subunit alpha. (441 aa)    
Predicted Functional Partners:
ENSACLP00000014589
GA binding protein transcription factor subunit beta 2a.
    
 0.998
ENSACLP00000012966
Tpd52 like 2b.
    
   0.924
atp5pf
ATP synthase peripheral stalk subunit F6.
      
 0.895
LOC113021131
E1A binding protein p300 b.
   
 
 0.880
LOC113027597
E1A binding protein p300 a.
   
 
 0.880
NUP62
Nucleoporin 62.
    
   0.771
ENSACLP00000036881
CREB binding protein a.
   
 
 0.762
LOC113020749
CREB binding protein b.
   
 
 0.762
tfam
Transcription factor A, mitochondrial.
   
 
 0.751
LOC113016358
BHLH domain-containing protein.
    
 0.715
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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