LOC113008317 protein (Astatotilapia calliptera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC113008317

U2 small nuclear RNA auxiliary factor 1. (238 aa)

Predicted Functional Partners:

LOC113020252

0.987

u2af2

0.987

LOC113036335

0.936

LOC113030324

0.936

sf3b1

0.934

LOC113020183

0.924

LOC113028211

0.924

sf3a2

0.897

sf3b2

0.896

ENSACLP00000023120

0.879

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000023120	LOC113008317	ENSACLP00000023120	ENSACLP00000005244	Serine and arginine rich splicing factor 9.	U2 small nuclear RNA auxiliary factor 1.	0.879
ENSACLP00000023120	LOC113020183	ENSACLP00000023120	ENSACLP00000026285	Serine and arginine rich splicing factor 9.	RRM domain-containing protein.	0.979
ENSACLP00000023120	LOC113020252	ENSACLP00000023120	ENSACLP00000030734	Serine and arginine rich splicing factor 9.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.912
ENSACLP00000023120	LOC113028211	ENSACLP00000023120	ENSACLP00000040083	Serine and arginine rich splicing factor 9.	Serine and arginine rich splicing factor 2a.	0.979
ENSACLP00000023120	LOC113030324	ENSACLP00000023120	ENSACLP00000031997	Serine and arginine rich splicing factor 9.	Uncharacterized protein.	0.993
ENSACLP00000023120	LOC113036335	ENSACLP00000023120	ENSACLP00000008347	Serine and arginine rich splicing factor 9.	Uncharacterized protein.	0.993
ENSACLP00000023120	sf3a2	ENSACLP00000023120	ENSACLP00000003437	Serine and arginine rich splicing factor 9.	Splicing factor 3a, subunit 2.	0.880
ENSACLP00000023120	sf3b1	ENSACLP00000023120	ENSACLP00000034805	Serine and arginine rich splicing factor 9.	Splicing factor 3b, subunit 1.	0.864
ENSACLP00000023120	sf3b2	ENSACLP00000023120	ENSACLP00000021811	Serine and arginine rich splicing factor 9.	Splicing factor 3b, subunit 2.	0.813
ENSACLP00000023120	u2af2	ENSACLP00000023120	ENSACLP00000032751	Serine and arginine rich splicing factor 9.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.912
LOC113008317	ENSACLP00000023120	ENSACLP00000005244	ENSACLP00000023120	U2 small nuclear RNA auxiliary factor 1.	Serine and arginine rich splicing factor 9.	0.879
LOC113008317	LOC113020183	ENSACLP00000005244	ENSACLP00000026285	U2 small nuclear RNA auxiliary factor 1.	RRM domain-containing protein.	0.924
LOC113008317	LOC113020252	ENSACLP00000005244	ENSACLP00000030734	U2 small nuclear RNA auxiliary factor 1.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.987
LOC113008317	LOC113028211	ENSACLP00000005244	ENSACLP00000040083	U2 small nuclear RNA auxiliary factor 1.	Serine and arginine rich splicing factor 2a.	0.924
LOC113008317	LOC113030324	ENSACLP00000005244	ENSACLP00000031997	U2 small nuclear RNA auxiliary factor 1.	Uncharacterized protein.	0.936
LOC113008317	LOC113036335	ENSACLP00000005244	ENSACLP00000008347	U2 small nuclear RNA auxiliary factor 1.	Uncharacterized protein.	0.936
LOC113008317	sf3a2	ENSACLP00000005244	ENSACLP00000003437	U2 small nuclear RNA auxiliary factor 1.	Splicing factor 3a, subunit 2.	0.897
LOC113008317	sf3b1	ENSACLP00000005244	ENSACLP00000034805	U2 small nuclear RNA auxiliary factor 1.	Splicing factor 3b, subunit 1.	0.934
LOC113008317	sf3b2	ENSACLP00000005244	ENSACLP00000021811	U2 small nuclear RNA auxiliary factor 1.	Splicing factor 3b, subunit 2.	0.896
LOC113008317	u2af2	ENSACLP00000005244	ENSACLP00000032751	U2 small nuclear RNA auxiliary factor 1.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.987