STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113009452Uncharacterized protein. (178 aa)    
Predicted Functional Partners:
skp2
S-phase kinase-associated protein 2, E3 ubiquitin protein ligase.
    
 0.971
ccne1
Cyclin E1; Belongs to the cyclin family.
   
 0.969
LOC113032810
Cyclin E2; Belongs to the cyclin family.
   
 0.969
cul1
Cullin 1b; Belongs to the cullin family.
    
 0.952
ccna1
Cyclin A1; Belongs to the cyclin family.
    
 0.949
LOC113031225
Cyclin A2; Belongs to the cyclin family.
    
 0.949
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.949
LOC113027151
Cyclin D2, a; Belongs to the cyclin family.
   
 0.948
CCND1
Cyclin D1; Belongs to the cyclin family.
   
 0.948
LOC113009062
Cyclin D2, b; Belongs to the cyclin family.
   
 0.948
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.