Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cdpf1C6_DPF domain-containing protein. (118 aa)    
Predicted Functional Partners:
ENSACLP00000005435
Ataxin 10.
      
 0.709
dnlz
DNL-type zinc finger.
      
 0.655
wdr89
WD repeat domain 89.
      
 0.586
psmd9
Proteasome 26S subunit, non-ATPase 9.
      
 0.517
prorp
Protein only RNase P catalytic subunit.
      
 0.491
lmln
Leishmanolysin-like peptidase.
      
 0.487
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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