Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ENSACLP00000005288Vacuolar protein sorting 13 homolog D. (4306 aa)    
Predicted Functional Partners:
LOC113022358
Aldo-keto reductase family 7, member A3 (aflatoxin aldehyde reductase).
      
 0.797
ENSACLP00000019596
Proline rich 16.
      
 0.714
ENSACLP00000003749
Si:dkeyp-104h9.5.
      
 0.710
ENSACLP00000005047
Immunoglobin superfamily, member 21b.
      
 0.710
VPS13B
Vacuolar protein sorting 13 homolog B.
   
  
 0.667
LOC113019656
Uncharacterized protein.
      
 0.657
srrt
Serrate RNA effector molecule homolog (Arabidopsis).
      
 0.657
park7
Parkinson protein 7.
      
 0.655
miga2
Mitoguardin 2.
      
 0.655
c12h12orf65
Si:ch211-275j6.5.
      
 0.639
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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