Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
c1ql1Complement component 1, q subcomponent-like 3b. (265 aa)    
Predicted Functional Partners:
ENSACLP00000026996
VWFA domain-containing protein.
   
 0.647
ENSACLP00000041154
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.647
LOC113022754
Tankyrase_bdg_C domain-containing protein.
    
  0.636
msh3
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
      
 0.608
ENSACLP00000020182
SH3 domain-containing protein.
      
 0.586
ENSACLP00000031964
Integrin beta; Belongs to the integrin beta chain family.
    
 0.530
ENSACLP00000033830
Integrin beta.
    
 0.530
LOC113007686
Uncharacterized protein.
   
 0.528
LOC113010710
Collagen, type VI, alpha 2.
   
 0.528
fam135a
Family with sequence similarity 135 member A.
      
 0.527
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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