skap2 protein (Astatotilapia calliptera) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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co-expression

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gene neighborhood

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[Homology]

Score

skap2

Src kinase associated phosphoprotein 2. (339 aa)

Predicted Functional Partners:

itga4

0.866

itga9

0.866

LOC113008411

0.862

LOC113010138

0.858

itgb1

0.858

LOC113007074

0.843

itga8

0.841

itgav

0.841

LOC113012814

0.841

LOC113022983

0.841

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC113007074	LOC113008411	ENSACLP00000035890	ENSACLP00000036151	Uncharacterized protein.	Integrin beta.	0.863
LOC113007074	LOC113010138	ENSACLP00000035890	ENSACLP00000002949	Uncharacterized protein.	Integrin beta; Belongs to the integrin beta chain family.	0.863
LOC113007074	LOC113012814	ENSACLP00000035890	ENSACLP00000033749	Uncharacterized protein.	Integrin, alpha 5 (fibronectin receptor, alpha polypeptide); Belongs to the integrin alpha chain family.	0.841
LOC113007074	LOC113022983	ENSACLP00000035890	ENSACLP00000036399	Uncharacterized protein.	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.	0.841
LOC113007074	itga4	ENSACLP00000035890	ENSACLP00000037878	Uncharacterized protein.	Integrin alpha 4; Belongs to the integrin alpha chain family.	0.867
LOC113007074	itga8	ENSACLP00000035890	ENSACLP00000008400	Uncharacterized protein.	Integrin, alpha 8; Belongs to the integrin alpha chain family.	0.841
LOC113007074	itga9	ENSACLP00000035890	ENSACLP00000039160	Uncharacterized protein.	Integrin, alpha 9; Belongs to the integrin alpha chain family.	0.867
LOC113007074	itgav	ENSACLP00000035890	ENSACLP00000022592	Uncharacterized protein.	Integrin, alpha V; Belongs to the integrin alpha chain family.	0.841
LOC113007074	itgb1	ENSACLP00000035890	ENSACLP00000016891	Uncharacterized protein.	Integrin beta; Belongs to the integrin beta chain family.	0.863
LOC113007074	skap2	ENSACLP00000035890	ENSACLP00000005319	Uncharacterized protein.	Src kinase associated phosphoprotein 2.	0.843
LOC113008411	LOC113007074	ENSACLP00000036151	ENSACLP00000035890	Integrin beta.	Uncharacterized protein.	0.863
LOC113008411	LOC113010138	ENSACLP00000036151	ENSACLP00000002949	Integrin beta.	Integrin beta; Belongs to the integrin beta chain family.	0.556
LOC113008411	LOC113012814	ENSACLP00000036151	ENSACLP00000033749	Integrin beta.	Integrin, alpha 5 (fibronectin receptor, alpha polypeptide); Belongs to the integrin alpha chain family.	0.956
LOC113008411	LOC113022983	ENSACLP00000036151	ENSACLP00000036399	Integrin beta.	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.	0.956
LOC113008411	itga4	ENSACLP00000036151	ENSACLP00000037878	Integrin beta.	Integrin alpha 4; Belongs to the integrin alpha chain family.	0.971
LOC113008411	itga8	ENSACLP00000036151	ENSACLP00000008400	Integrin beta.	Integrin, alpha 8; Belongs to the integrin alpha chain family.	0.956
LOC113008411	itga9	ENSACLP00000036151	ENSACLP00000039160	Integrin beta.	Integrin, alpha 9; Belongs to the integrin alpha chain family.	0.971
LOC113008411	itgav	ENSACLP00000036151	ENSACLP00000022592	Integrin beta.	Integrin, alpha V; Belongs to the integrin alpha chain family.	0.956
LOC113008411	itgb1	ENSACLP00000036151	ENSACLP00000016891	Integrin beta.	Integrin beta; Belongs to the integrin beta chain family.	0.555
LOC113008411	skap2	ENSACLP00000036151	ENSACLP00000005319	Integrin beta.	Src kinase associated phosphoprotein 2.	0.862