Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pdlim7PDZ and LIM domain 7. (516 aa)    
Predicted Functional Partners:
ldb3
Uncharacterized protein.
   
 
0.943
LOC113028239
LIM domain binding 3b.
   
 
0.942
LOC113025740
PDZ and LIM domain 5b.
     
 
0.938
ENSACLP00000028972
PDZ and LIM domain 5a.
     
 
0.937
pdlim1
PDZ and LIM domain 1 (elfin).
   
 
0.831
pdlim3
PDZ and LIM domain 3a.
   
 
0.830
ACTN4
Actinin alpha 4.
   
 
 0.792
actn3
Actinin alpha 3b.
   
 
 0.792
LOC113034931
Actinin, alpha 2b.
   
 
 0.792
actn1
Actinin, alpha 1.
   
 
 0.792
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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