STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cdk7Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (343 aa)    
Predicted Functional Partners:
ccnh
Cyclin H; Belongs to the cyclin family.
    
 0.995
ENSACLP00000029920
MNAT1 component of CDK activating kinase.
   
 0.989
gtf2h3
General transcription factor IIH, polypeptide 3.
    
 0.988
LOC113033395
General transcription factor IIH subunit.
   
 0.984
ercc2
Excision repair cross-complementation group 2.
    
 0.982
gtf2e2
Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.
   
 0.978
ENSACLP00000017663
General transcription factor IIH, polypeptide 1.
   
 0.976
gtf2e1
General transcription factor IIE, polypeptide 1, alpha.
    
 0.975
ercc3
Excision repair cross-complementation group 3.
    
 0.975
gtf2h4
General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.971
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.