LOC113006880 protein (Astatotilapia calliptera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC113006880

Aquaporin 4; Belongs to the MIP/aquaporin (TC 1.A.8) family. (321 aa)

Predicted Functional Partners:

KATNAL2

0.765

LOC113016036

0.750

KATNA1

0.747

KATNA1-2

0.747

LOC113007633

0.727

shpk

0.727

ENSACLP00000014057

0.727

psmc5

0.727

LOC113014266

0.727

psmc2

0.727

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000014057	KATNAL2	ENSACLP00000014057	ENSACLP00000037605	Glycerol kinase 5; Belongs to the FGGY kinase family.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.422
ENSACLP00000014057	LOC113006880	ENSACLP00000014057	ENSACLP00000005333	Glycerol kinase 5; Belongs to the FGGY kinase family.	Aquaporin 4; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.727
ENSACLP00000014057	LOC113016036	ENSACLP00000014057	ENSACLP00000017463	Glycerol kinase 5; Belongs to the FGGY kinase family.	Glycerol-3-phosphate dehydrogenase 2 (mitochondrial).	0.967
KATNA1	KATNAL2	ENSACLP00000027100	ENSACLP00000037605	Katanin p60 ATPase-containing subunit A1; Catalytic subunit of a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.468
KATNA1	LOC113006880	ENSACLP00000027100	ENSACLP00000005333	Katanin p60 ATPase-containing subunit A1; Catalytic subunit of a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.	Aquaporin 4; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.747
KATNA1	LOC113016036	ENSACLP00000027100	ENSACLP00000017463	Katanin p60 ATPase-containing subunit A1; Catalytic subunit of a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.	Glycerol-3-phosphate dehydrogenase 2 (mitochondrial).	0.938
KATNA1-2	KATNAL2	ENSACLP00000040087	ENSACLP00000037605	Katanin p60 ATPase-containing subunit A1; Catalytic subunit of a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.466
KATNA1-2	LOC113006880	ENSACLP00000040087	ENSACLP00000005333	Katanin p60 ATPase-containing subunit A1; Catalytic subunit of a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.	Aquaporin 4; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.747
KATNA1-2	LOC113016036	ENSACLP00000040087	ENSACLP00000017463	Katanin p60 ATPase-containing subunit A1; Catalytic subunit of a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.	Glycerol-3-phosphate dehydrogenase 2 (mitochondrial).	0.938
KATNAL2	ENSACLP00000014057	ENSACLP00000037605	ENSACLP00000014057	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Glycerol kinase 5; Belongs to the FGGY kinase family.	0.422
KATNAL2	KATNA1	ENSACLP00000037605	ENSACLP00000027100	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Katanin p60 ATPase-containing subunit A1; Catalytic subunit of a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.	0.468
KATNAL2	KATNA1-2	ENSACLP00000037605	ENSACLP00000040087	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Katanin p60 ATPase-containing subunit A1; Catalytic subunit of a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.	0.466
KATNAL2	LOC113006880	ENSACLP00000037605	ENSACLP00000005333	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Aquaporin 4; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.765
KATNAL2	LOC113007633	ENSACLP00000037605	ENSACLP00000000395	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Uncharacterized protein; Belongs to the FGGY kinase family.	0.422
KATNAL2	LOC113014266	ENSACLP00000037605	ENSACLP00000016936	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Bromo domain-containing protein.	0.482
KATNAL2	LOC113016036	ENSACLP00000037605	ENSACLP00000017463	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Glycerol-3-phosphate dehydrogenase 2 (mitochondrial).	0.956
KATNAL2	psmc2	ENSACLP00000037605	ENSACLP00000017620	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Proteasome 26S subunit, ATPase 2; Belongs to the AAA ATPase family.	0.461
KATNAL2	psmc5	ENSACLP00000037605	ENSACLP00000016911	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family.	0.465
KATNAL2	shpk	ENSACLP00000037605	ENSACLP00000009530	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Sedoheptulokinase.	0.422
LOC113006880	ENSACLP00000014057	ENSACLP00000005333	ENSACLP00000014057	Aquaporin 4; Belongs to the MIP/aquaporin (TC 1.A.8) family.	Glycerol kinase 5; Belongs to the FGGY kinase family.	0.727