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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hmgcll13-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1. (341 aa)    
Predicted Functional Partners:
bcat1
Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
  
 0.981
LOC113020289
Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
  
 0.981
idh3g
Isocitrate dehydrogenase [NAD] subunit, mitochondrial.
  
 0.951
idh3b
Isocitrate dehydrogenase [NAD] subunit, mitochondrial.
  
 0.951
ENSACLP00000022520
Isocitrate dehydrogenase [NAD] subunit, mitochondrial.
  
 0.951
LOC113026760
Isocitrate dehydrogenase [NAD] subunit, mitochondrial.
  
 0.951
LOC113026841
Isocitrate dehydrogenase [NAD] subunit, mitochondrial.
  
 0.951
oxct1
Succinyl-CoA:3-ketoacid-coenzyme A transferase; Key enzyme for ketone body catabolism. Transfers the CoA moiety from succinate to acetoacetate. Formation of the enzyme-CoA intermediate proceeds via an unstable anhydride species formed between the carboxylate groups of the enzyme and substrate.
  
 
 0.949
LOC113030206
Malate synthase-like.
  
 
 0.948
cs
Citrate synthase; Belongs to the citrate synthase family.
  
 
 0.934
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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