STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FEM1AFem-1 homolog A. (617 aa)    
Predicted Functional Partners:
cul2
Cullin 2; Belongs to the cullin family.
    
 0.965
eloc
Elongin C paralog a; Belongs to the SKP1 family.
    
 0.953
COPS6
COP9 signalosome subunit 6.
    
 0.888
LOC113019345
Ubiquitin-like domain-containing protein.
    
 0.880
LOC113020323
Elongin B.
    
 0.880
cops2
COP9 signalosome subunit 2.
    
  0.879
cops3
COP9 signalosome subunit 3.
    
 0.877
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.849
ppm1f
Protein phosphatase, Mg2+/Mn2+ dependent, 1F.
   
 
 0.829
ppm1e
Protein phosphatase, Mg2+/Mn2+ dependent, 1E.
   
 
 0.829
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.