Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC113011368Uncharacterized protein. (347 aa)    
Predicted Functional Partners:
LOC113034379
Folliculogenesis specific bHLH transcription factor.
   
 0.841
LOC113034698
LIM domain binding 1a.
    
 0.737
ldb2
LIM domain binding 2a.
    
 0.737
LOC113023769
LIM-domain binding 1b.
    
 0.737
ENSACLP00000014013
EF-hand calcium binding domain 2.
    
 
 0.670
ccm2
CCM2 scaffold protein.
    
 
 0.641
nme9
NME/NM23 family member 8; Belongs to the NDK family.
    
   0.628
elp1
Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.
      
 0.602
ENSACLP00000017156
WD repeat domain 90.
    
   0.559
ENSACLP00000026654
Nudix (nucleoside diphosphate linked moiety X)-type motif 22.
    
   0.558
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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