Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000005368Double zinc ribbon and ankyrin repeat domains 1. (665 aa)    
Predicted Functional Partners:
CEP128
Uncharacterized protein.
      
 0.655
zmynd12
Zinc finger, MYND-type containing 12.
      
 0.615
polr3f
DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.
      
 0.610
svopl
SVOP-like.
      
 0.602
rab3gap2
RAB3 GTPase activating protein subunit 2 (non-catalytic).
      
 0.526
LOC113008380
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
      
 0.525
ENSACLP00000017141
Integrin-linked kinase-associated serine/threonine phosphatase.
      
 0.504
elk4
ETS transcription factor ELK4.
      
 0.474
ENSACLP00000026187
Coiled-coil and C2 domain containing 2A.
      
 0.465
ENSACLP00000040981
OTU deubiquitinase 1.
      
 0.424
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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