STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113032446Chromobox homolog 3b. (192 aa)    
Predicted Functional Partners:
RING1
Ring finger protein 1.
    
 0.681
ENSACLP00000033001
Ring finger protein 2.
    
 0.681
ENSACLP00000008291
Chromatin assembly factor 1, subunit A (p150).
   
 
 0.670
emsy
EMSY transcriptional repressor, BRCA2 interacting.
    
 
 0.661
tfdp1
Transcription factor.
   
 0.608
H2AZ1
Histone H2A; Belongs to the histone H2A family.
   
 0.597
LOC113033615
Histone H2A; Belongs to the histone H2A family.
   
 0.597
pcgf5
Polycomb group ring finger 5a.
    
 0.543
pcgf2
Polycomb group ring finger 2.
    
 0.538
pcgf1
Polycomb group ring finger 1.
    
 0.538
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.