STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000005378Ninein-like. (1235 aa)    
Predicted Functional Partners:
LOC113007418
RAN binding protein 2.
   
 0.711
LOC113018559
CAP-Gly domain-containing protein.
    
 
 0.707
ENSACLP00000040036
Dynactin 1b.
    
 
 0.707
PLK1
Serine/threonine-protein kinase PLK.
    
 0.643
plk2
Serine/threonine-protein kinase PLK.
    
 0.643
plk3
Serine/threonine-protein kinase PLK.
    
 0.643
ENSACLP00000022593
DPH-type MB domain-containing protein.
    
 
 0.630
zfand4
Zinc finger, AN1-type domain 4.
    
 0.623
tubg1
Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.
    
 
 0.612
rbpj
Recombination signal binding protein for immunoglobulin kappa J region.
    
 0.608
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.