Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC113008878Uncharacterized protein. (824 aa)    
Predicted Functional Partners:
WDR1
WD repeat domain 1.
      
 0.720
gnpnat1
Glucosamine 6-phosphate N-acetyltransferase.
    
 
 0.662
elp2
Elongator acetyltransferase complex subunit 2.
    
 
 0.650
zbtb49
Zinc finger and BTB domain containing 49.
    
 
 0.622
LOC113010339
Ependymin related 1.
      
 0.611
nup58
Nucleoporin 58.
    
 
 0.561
arhgef9
Cdc42 guanine nucleotide exchange factor (GEF) 9b.
  
   
 0.552
babam1
BRISC and BRCA1 A complex member 1.
    
 0.543
LOC113025474
Uncharacterized protein.
  
 
  0.542
mdc1
Uncharacterized protein.
  
 
   0.528
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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