Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000005456Visual system homeobox 1 homolog, chx10-like. (359 aa)    
Predicted Functional Partners:
atoh7
Atonal bHLH transcription factor 7.
      
 0.696
bhlhe23
Basic helix-loop-helix family, member e23.
   
  
 0.630
ptf1a
Pancreas associated transcription factor 1a.
      
 0.606
ENSACLP00000000401
Forkhead box N4.
      
 0.605
pou4f2
POU domain protein.
   
  
 0.587
usp46
Ubiquitin specific peptidase 46; Belongs to the peptidase C19 family.
    
   0.568
ENSACLP00000028395
Ubiquitin specific peptidase 12b; Belongs to the peptidase C19 family.
    
   0.568
usp12
Ubiquitin specific peptidase 12a; Belongs to the peptidase C19 family.
    
   0.568
LOC113031339
Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.
    
   0.549
LOC113014639
Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.
    
   0.549
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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