STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000005459Uncharacterized protein; Belongs to the AAA ATPase family. (501 aa)    
Predicted Functional Partners:
ENSACLP00000035637
UBX domain-containing protein 7.
   
 0.964
ist1
IST1 factor associated with ESCRT-III.
    
 0.882
chmp3
Charged multivesicular body protein 3.
   
 0.850
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 0.847
ubxn1
UBX domain protein 1.
    
 0.808
yod1
YOD1 deubiquitinase.
   
 0.803
FAAP100
FA core complex associated protein 100.
    
 0.800
nploc4
NPL4 homolog, ubiquitin recognition factor.
    
 0.800
faf2
Fas associated factor family member 2.
   
 0.794
faf1
Fas (TNFRSF6) associated factor 1.
   
 0.794
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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