Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
LOC113021333Insulin-like growth factor 2 mRNA binding protein 1. (601 aa)    
Predicted Functional Partners:
ENSACLP00000025221
Interleukin enhancer binding factor 2.
    
 
 0.753
YTHDF1
YTH N6-methyladenosine RNA binding protein 1.
    
 
 0.724
LOC113012021
ELAV-like protein; Belongs to the RRM elav family.
    
 
 0.695
LOC113016105
ELAV-like protein; Belongs to the RRM elav family.
    
 
 0.695
stau1
Staufen double-stranded RNA binding protein 1.
    
 
 0.653
stau2
Staufen double-stranded RNA binding protein 2.
    
 
 0.653
usp10
Ubiquitin carboxyl-terminal hydrolase.
   
 
 0.631
LIN28A
Lin-28 homolog A.
   
 
 0.630
lin28b
Lin-28 homolog B (C. elegans).
   
 
 0.623
capn7
Calpain 7; Belongs to the peptidase C2 family.
    
   0.614
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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