Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
grsf1Uncharacterized protein. (409 aa)    
Predicted Functional Partners:
fastkd2
FAST kinase domains 2.
   
 
 0.916
mtpap
Mitochondrial poly(A) polymerase.
    
 0.915
ENSACLP00000035850
tRNA methyltransferase 10C, mitochondrial RNase P subunit.
   
 
 0.906
PNPT1
Polyribonucleotide nucleotidyltransferase 1.
    
 
 0.890
ENSACLP00000008580
Mitochondrial rRNA methyltransferase 3a.
    
 
 0.876
dazap1
DAZ associated protein 1.
   
 0.875
ighmbp2
Immunoglobulin mu DNA binding protein 2.
    
   0.873
dhx30
DEAH (Asp-Glu-Ala-His) box helicase 30.
    
 
 0.868
ENSACLP00000030503
Heterogeneous nuclear ribonucleoprotein M.
   
 0.850
LOC113013145
Uncharacterized protein.
   
 0.841
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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