STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113008421Ankyrin repeat domain 10b. (338 aa)    
Predicted Functional Partners:
UBE3A
Ubiquitin-protein ligase E3A; E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and transfers it to its substrates.
    
 
 0.617
LOC113016095
Ubiquitin protein ligase E3A.
    
 
 0.617
traf7
TNF receptor-associated factor 7.
    
  0.601
rab20
RAB20, member RAS oncogene family.
    
 0.600
cars2
Cysteinyl-tRNA synthetase 2, mitochondrial.
   
 
 0.571
ankrd46
Ankyrin repeat domain 46b.
  
 
  0.567
bves
Blood vessel epicardial substance.
      
 0.558
pms1
PMS1 homolog 1, mismatch repair system component.
     
 0.550
hsf2bp
Heat shock transcription factor 2 binding protein.
      
 0.540
rchy1
Ring finger and CHY zinc finger domain containing 1.
      
 0.533
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
Server load: low (36%) [HD]