STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113012483Coiled-coil domain containing 28B. (212 aa)    
Predicted Functional Partners:
osgep
Probable tRNA N6-adenosine threonylcarbamoyltransferase; Component of the EKC/KEOPS complex that is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. The complex is probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. OSGEP likely plays a direct catalytic role in this reaction, but requires other protein(s) of the complex to fulfill this activity.
    
   0.801
bbs2
Bardet-Biedl syndrome 2 protein homolog.
    
 
 0.723
bbs1
Bardet-Biedl syndrome 1.
    
 
 0.722
ENSACLP00000019213
Bardet-Biedl syndrome 7.
    
 
 0.721
ENSACLP00000019941
Bardet-Biedl syndrome 4.
    
 
 0.718
ENSACLP00000020717
Bardet-Biedl syndrome 12.
      
 0.692
bbs10
Uncharacterized protein; Belongs to the TCP-1 chaperonin family.
    
 
 0.692
ttc8
Tetratricopeptide repeat domain 8.
    
 
 0.684
wdpcp
WD repeat containing planar cell polarity effector.
      
 0.676
mks1
MKS transition zone complex subunit 1.
      
 0.657
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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