Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nkx3-2NK3 homeobox 2. (265 aa)    
Predicted Functional Partners:
hand2
Heart and neural crest derivatives expressed 2.
    
 0.689
pax9
Paired box 9.
    
 
 0.678
foxf1
Forkhead box F1.
   
 0.615
LOC113011355
Forkhead box F2a.
   
 0.615
foxf2
Forkhead box F2b.
   
 0.615
LOC113021320
Homeobox domain-containing protein.
    
   0.610
LOC113028070
Homeobox B6b.
    
   0.610
edn1
Endothelin 1.
      
 0.609
tcf21
Transcription factor 21.
    
 0.578
msc
Musculin (activated B-cell factor-1).
    
 0.578
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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