Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000005553RUN and FYVE domain containing 3. (468 aa)    
Predicted Functional Partners:
LOC113034835
RUN and FYVE domain containing 1.
    
  0.983
rufy2
RUN and FYVE domain containing 2.
   
   0.927
uvrag
UV radiation resistance associated gene.
    
 0.844
rab4a
RAB4a, member RAS oncogene family.
    
  0.841
rab4b
RAB4B, member RAS oncogene family.
    
  0.841
ENSACLP00000000420
tRNA methyltransferase 9B.
    
   0.772
zc2hc1a
Zinc finger, C2HC-type containing 1A.
      
 0.738
ENSACLP00000025240
Si:dkey-280e21.3.
      
 0.666
ENSACLP00000025274
Uncharacterized protein.
      
 0.666
ENSACLP00000010328
Uncharacterized protein.
   
 
 0.665
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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