STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000005563ZnF_CDGSH domain-containing protein. (81 aa)    
Predicted Functional Partners:
mrpl24
Mitochondrial ribosomal protein L24.
   
   0.773
mrpl15
Mitochondrial ribosomal protein L15.
   
 
 0.731
mrpl13
Mitochondrial ribosomal protein L13.
   
   0.722
mrps16
Mitochondrial ribosomal protein S16.
   
   0.719
ENSACLP00000028949
Mitochondrial ribosomal protein L47.
   
   0.713
ENSACLP00000024469
Uncharacterized protein.
   
   0.710
mrpl17
Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
   
 
 0.710
RPL27A
Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.
   
 
 0.683
ENSACLP00000032040
Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family.
   
   0.673
mrpl12
Mitochondrial ribosomal protein L12.
   
   0.670
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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