Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000005563ZnF_CDGSH domain-containing protein. (81 aa)    
Predicted Functional Partners:
ENSACLP00000033386
Zgc:110843.
   
  
 0.746
RPL27A
Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.
   
 
 0.708
mrpl24
Mitochondrial ribosomal protein L24.
   
   0.659
LOC113025528
SURF1-like protein; Probably involved in the biogenesis of the COX complex. Belongs to the SURF1 family.
    
 
 0.641
cpeb2
Cytoplasmic polyadenylation element binding protein 2.
      
 0.627
mrps33
Mitochondrial ribosomal protein S33.
   
   0.626
LOC113027054
Mitochondrial ribosomal protein L23.
   
    0.625
mrpl17
Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
   
 
 0.623
pmpca
Peptidase (mitochondrial processing) alpha; Belongs to the peptidase M16 family.
   
   0.597
mrpl13
Mitochondrial ribosomal protein L13.
   
   0.594
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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