Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRTGProtogenin. (1174 aa)    
Predicted Functional Partners:
LOC113012951
Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.
    
 
 0.670
capsl
Calcyphosine-like b.
    
 
 0.596
LOC113030571
Angiomotin.
     
 0.564
rsl24d1
Ribosomal L24 domain containing 1.
      
 0.520
LRFN2
Leucine rich repeat and fibronectin type III domain containing 2.
    
 0.482
cgnl1
Cingulin-like 1.
      
 0.473
cfap299
Cilia and flagella associated protein 299.
    
 
 0.427
ENSACLP00000003990
Kelch domain containing 7A.
      
 0.419
kbtbd11
Kelch repeat and BTB (POZ) domain containing 11.
      
 0.419
LOC113010089
Vav 3 guanine nucleotide exchange factor b.
    
 0.418
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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