Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC113021335RAB11 family interacting protein 4 (class II) a. (596 aa)    
Predicted Functional Partners:
RAB11FIP3
RAB11 family interacting protein 3 (class II).
     
  0.871
LOC113031621
RAB11a, member RAS oncogene family, like.
    
 0.866
gsc
Goosecoid.
    
   0.835
LOC113034294
RAB11a, member RAS oncogene family.
    
 0.833
LOC113016185
RAB11B, member RAS oncogene family, a.
    
 0.833
LOC113016583
Uncharacterized protein.
    
 0.833
LOC113011118
Uncharacterized protein.
    
 0.833
ENSACLP00000027762
Uncharacterized protein.
    
 0.833
ENSACLP00000018134
RAB3A interacting protein (rabin3)-like 1.
    
 0.798
rab3ip
RAB3A interacting protein (rabin3).
    
 0.798
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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