Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000005590BHLH domain-containing protein. (206 aa)    
Predicted Functional Partners:
TCF4
Transcription factor 4.
    
 
 0.681
LOC113010171
Transcription factor 3a.
    
 
 0.681
tcf12
Transcription factor 12.
    
 
 0.681
LOC113026641
BHLH domain-containing protein.
    
 
 0.681
LOC113016192
Transcription factor 3b.
    
 
 0.681
ENSACLP00000001517
Achaete-scute family bHLH transcription factor 1b.
   
 
 0.536
ENSACLP00000024384
Achaete-scute family bHLH transcription factor 1a.
   
 
 0.536
LOC113021324
Homeobox B7a.
    
 
 0.425
LOC113010672
Uncharacterized protein.
    
 
 0.420
ENSACLP00000017965
Hairy-related 8.2.
    
 
 0.420
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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