STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113015542Tetraspanin. (249 aa)    
Predicted Functional Partners:
pick1
Protein interacting with prkca 1.
     
 0.723
met
MET proto-oncogene, receptor tyrosine kinase.
    
  0.618
LOC113022284
Macrophage stimulating 1 receptor a.
    
  0.618
mst1r
Macrophage stimulating 1 receptor b.
    
  0.618
ENSACLP00000010331
Glutamate receptor interacting protein 2b.
    
  0.587
gria2
Glutamate receptor, ionotropic, AMPA 2b.
   
 
  0.541
LOC113024706
Uncharacterized protein.
   
 
  0.541
LOC113021917
Immunoglobulin superfamily, member 8.
    
 
 0.506
grip1
Glutamate receptor interacting protein 1.
     
 0.499
pdgfb
Platelet-derived growth factor beta polypeptide a; Belongs to the PDGF/VEGF growth factor family.
    
  0.472
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.