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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113015574Uncharacterized protein; Belongs to the DEAD box helicase family. (741 aa)    
Predicted Functional Partners:
prpf6
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
    
 0.920
eftud2
Elongation factor Tu GTP binding domain containing 2.
  
 0.903
tbk1
TANK-binding kinase 1.
    
 0.899
ddx3x
DEAD-box helicase 3 X-linked a.
  
  
 
0.848
atp5f1c
ATP synthase subunit gamma.
  
 
 0.832
atp5po
ATP synthase peripheral stalk subunit OSCP.
  
 
 0.831
gtpbp4
GTP binding protein 4.
   
 
 0.821
sf3b1
Splicing factor 3b, subunit 1.
   
 0.813
ENSACLP00000033349
Splicing factor 3b, subunit 3.
   
 0.811
rbm8a
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
    
 0.800
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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