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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pds5bPDS5 cohesin associated factor B. (1409 aa)    
Predicted Functional Partners:
smc3
Structural maintenance of chromosomes protein.
   
 0.988
rad21
RAD21 cohesin complex component a.
   
 0.987
smc1a
Structural maintenance of chromosomes protein.
   
 0.979
LOC113026355
Structural maintenance of chromosomes protein.
   
 0.979
LOC113029849
REC8 meiotic recombination protein b.
   
 0.968
LOC113027962
WAPL cohesin release factor b.
   
 0.961
wapl
WAPL cohesin release factor a.
   
 0.961
LOC113029175
Uncharacterized protein.
   
 0.938
esco2
Establishment of sister chromatid cohesion N-acetyltransferase 2.
   
 0.938
ENSACLP00000005893
SCD domain-containing protein.
   
 0.936
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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