Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pds5bPDS5 cohesin associated factor B. (1409 aa)    
Predicted Functional Partners:
smc3
Structural maintenance of chromosomes protein.
   
 0.992
smc1a
Structural maintenance of chromosomes protein.
   
 0.979
rad21
RAD21 cohesin complex component a.
   
 0.977
ENSACLP00000020708
Nipped-B protein.
   
 0.970
ENSACLP00000028272
Nipped-B protein.
   
 0.970
LOC113026355
Structural maintenance of chromosomes protein.
   
 0.969
LOC113027962
WAPL cohesin release factor b.
   
 0.966
wapl
WAPL cohesin release factor a.
   
 0.966
ENSACLP00000020732
Uncharacterized protein.
   
 0.953
esco2
Establishment of sister chromatid cohesion N-acetyltransferase 2.
    
 0.953
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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