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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000005618Usher syndrome 1C. (523 aa)    
Predicted Functional Partners:
ENSACLP00000032038
Uncharacterized protein.
   
 
 0.988
ENSACLP00000031846
Usher syndrome 1Gb (autosomal recessive).
   
 0.974
LOC113020683
Usher syndrome 1Ga (autosomal recessive).
   
 0.974
LOC113020803
Ankyrin repeat and sterile alpha motif domain containing 4B.
   
 0.973
cdhr2
Uncharacterized protein.
   
 
 0.960
ENSACLP00000018516
Protocadherin-related 15b.
   
 
 0.899
ENSACLP00000022278
Protocadherin-related 15a.
   
 
 0.899
ENSACLP00000022304
Si:dkeyp-86d6.2.
   
 
 0.899
LOC113009135
Uncharacterized protein.
   
 
 0.896
LOC113027407
Uncharacterized protein.
   
 
 0.896
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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