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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000005618Usher syndrome 1C. (523 aa)    
Predicted Functional Partners:
ENSACLP00000031846
Usher syndrome 1Gb (autosomal recessive).
    
 0.944
LOC113020683
Usher syndrome 1Ga (autosomal recessive).
    
 0.944
LOC113020803
Ankyrin repeat and sterile alpha motif domain containing 4B.
    
 0.944
ENSACLP00000032038
Uncharacterized protein.
   
 
 0.937
cdhr2
Uncharacterized protein.
   
 
 0.920
ENSACLP00000023789
Myosin VIIAa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 0.760
ENSACLP00000034131
Myosin VIIAb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 0.760
ENSACLP00000026146
Intraflagellar transport 88 homolog.
    
 0.732
ift57
Intraflagellar transport 57 homolog (Chlamydomonas).
    
 0.731
myo15b
Myosin XVB; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 0.713
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.