Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000005632Reverse transcriptase domain-containing protein. (1261 aa)    
Predicted Functional Partners:
babam1
BRISC and BRCA1 A complex member 1.
    
 0.852
ENSACLP00000001733
BRCA1/BRCA2-containing complex, subunit 3.
    
 0.826
babam2
BRISC and BRCA1 A complex member 2.
    
 0.809
LOC113008023
BRCA1 associated RING domain 1.
    
 0.759
ENSACLP00000013582
Uncharacterized protein.
    
 0.732
RPS27A
Ribosomal protein S27a.
    
  0.715
ENSACLP00000009063
PAX interacting (with transcription-activation domain) protein 1.
    
 0.602
mdc1
Uncharacterized protein.
    
 0.602
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.595
ENSACLP00000010589
Tumor protein p53 binding protein, 1.
    
 0.575
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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