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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ptx3Pentraxin 3, long b. (457 aa)    
Predicted Functional Partners:
ENSACLP00000030483
Lecithin-cholesterol acyltransferase.
     
 0.815
tnfaip6
Tumor necrosis factor, alpha-induced protein 6.
   
 
 0.803
ENSACLP00000037520
Uncharacterized protein.
    
 
 0.796
fgf17
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
    
 
 0.576
ENSACLP00000014120
Fibrinogen C-terminal domain-containing protein.
    
 
 0.568
fibcd1
Fibrinogen C domain containing 1.
    
 
 0.568
LOC113025889
Alpha-1-microglobulin/bikunin precursor.
      
 0.535
fgf8
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
    
 
 0.508
FGF6
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
    
 
 0.508
FGF6-2
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
    
 
 0.508
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.