STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113033109Homer scaffold protein 1b. (363 aa)    
Predicted Functional Partners:
LOC113010015
WH1 domain-containing protein.
  
 
0.968
ENSACLP00000033147
Homer scaffold protein 3b.
  
 
0.968
grm1
Glutamate receptor, metabotropic 1a.
    
 0.923
LOC113011728
Glutamate receptor, metabotropic 1b.
    
 0.914
LOC113030687
Glutamate receptor, metabotropic 5a.
    
 0.907
grm5
Glutamate receptor, metabotropic 5b.
    
 0.907
homer2
Homer scaffold protein 2.
  
 
 
0.860
ENSACLP00000002631
Uncharacterized protein.
    
   0.811
ENSACLP00000003818
Uncharacterized protein.
    
 0.741
ENSACLP00000018695
PDZ domain-containing protein.
    
 0.741
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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