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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tctn1DUF1619 domain-containing protein. (610 aa)    
Predicted Functional Partners:
ENSACLP00000026348
Uncharacterized protein.
    
 0.930
b9d1
B9 protein domain 1.
    
 0.907
ENSACLP00000026187
Coiled-coil and C2 domain containing 2A.
    
 0.898
ENSACLP00000007835
Abelson helper integration site 1.
    
 0.861
mks1
MKS transition zone complex subunit 1.
    
 0.853
ENSACLP00000011309
Transmembrane protein 67.
   
 
 0.838
LOC113032048
Transmembrane protein 216.
     
 0.832
eef2
Eukaryotic translation elongation factor 2b.
    
 0.818
LOC113016085
Tr-type G domain-containing protein.
    
 0.818
ENSACLP00000018618
Kin17_mid domain-containing protein.
    
 0.716
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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