STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113037587Zinc finger, AN1-type domain 3. (230 aa)    
Predicted Functional Partners:
ENSACLP00000011619
Rabaptin, RAB GTPase binding effector protein 2.
    
 0.847
rabep1
Rabaptin, RAB GTPase binding effector protein 1.
    
 0.847
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.773
RPS27A
Ribosomal protein S27a.
    
  0.743
ENSACLP00000015886
RAB21, member RAS oncogene family.
    
 
 0.635
LOC113024512
Uncharacterized protein.
    
 0.592
LOC113023714
Golgi associated, gamma adaptin ear containing, ARF binding protein 1.
    
 0.592
LOC113021179
Uncharacterized protein.
    
 0.592
zfand4
Zinc finger, AN1-type domain 4.
    
 0.556
ENSACLP00000023265
Alsin Rho guanine nucleotide exchange factor ALS2 b.
    
 0.554
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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