STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000005685Ig-like domain-containing protein. (134 aa)    
Predicted Functional Partners:
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
  0.880
ENSACLP00000002194
LRRCT domain-containing protein.
    
 0.750
LOC113021365
Si:ch211-237i5.4.
    
 0.750
LOC113028165
Uncharacterized protein.
    
 0.750
frem1
Fras1 related extracellular matrix 1a.
    
 0.710
ENSACLP00000030575
Fras1 related extracellular matrix 1b.
    
 0.710
ENSACLP00000001877
Fraser extracellular matrix complex subunit 1.
    
  0.708
gle1
GLE1 RNA export mediator.
    
 0.688
ENSACLP00000012590
Nucleoporin 214.
    
 0.684
gp1bb
Glycoprotein Ib platelet subunit beta.
   
 0.649
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.