STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000005699Fer-1 like family member 4. (1919 aa)    
Predicted Functional Partners:
LOC113026770
OTU deubiquitinase 7A.
   
  
 0.729
nfs1
NFS1 cysteine desulfurase.
      
 0.723
llgl2
LLGL scribble cell polarity complex component 2.
      
 0.705
LOC113037196
Glutaredoxin 5 homolog (S. cerevisiae).
      
 0.654
LOC113037196-2
Glutaredoxin-related protein 5, mitochondrial-like.
      
 0.654
blcap
Bladder cancer associated protein.
   
  
 0.607
ccn6
Cellular communication network factor 6.
   
  
 0.606
ASTN2
Astrotactin 2.
      
 0.603
LOC113021701
Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.
    
 0.585
ENSACLP00000003541
Uncharacterized protein.
      
 0.578
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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