Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC113008966Uncharacterized protein. (347 aa)    
Predicted Functional Partners:
cdk12
Cyclin-dependent kinase 12.
    
 
 0.589
cdk13
Cyclin-dependent kinase 13.
    
 
 0.589
LOC113021021
Aly/REF export factor.
   
   0.505
LOC113023193
RRM domain-containing protein.
   
   0.505
ENSACLP00000024611
Polymerase (DNA-directed), delta interacting protein 3.
   
   0.505
rbbp5
Retinoblastoma binding protein 5.
    
 0.468
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
    
  0.458
ENSACLP00000002507
Uncharacterized protein.
  
     0.414
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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