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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sde2SDE2 telomere maintenance homolog (S. pombe). (394 aa)    
Predicted Functional Partners:
ENSACLP00000010721
SLU7 homolog, splicing factor.
    
 0.975
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
    
 0.973
ENSACLP00000002722
Family with sequence similarity 32 member A.
    
 0.961
syf2
SYF2 pre-mRNA-splicing factor.
    
  0.955
WDR25
WD repeat domain 25.
    
 0.948
ENSACLP00000037635
CWC22 spliceosome associated protein homolog.
    
  0.946
ENSACLP00000004689
Cactin.
    
 0.945
prpf19
Pre-mRNA processing factor 19.
    
 
 0.941
ENSACLP00000002234
NFKB activating protein.
    
 0.940
LOC113037195
Uncharacterized protein.
    
 0.935
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.