STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113027227SCY domain-containing protein. (99 aa)    
Predicted Functional Partners:
irf5
Interferon regulatory factor 5.
     
  0.835
LOC113032065
G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.
    
  0.789
LOC113032582
G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.
    
  0.789
LOC113031985
Cabz01093075.1; Belongs to the G-protein coupled receptor 1 family.
    
 0.751
LOC113017336
SCY domain-containing protein.
     
  0.734
ENSACLP00000009786
SCY domain-containing protein.
     
  0.728
ENSACLP00000026414
Si:cabz01093077.1; Belongs to the G-protein coupled receptor 1 family.
    
  0.714
LOC113021698
Interferon regulatory factor 6.
     
  0.699
LOC113022493
Interferon regulatory factor 6.
     
  0.699
ENSACLP00000018137
Jun proto-oncogene, AP-1 transcription factor subunit; Belongs to the bZIP family.
    
 0.667
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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