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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113036120Programmed cell death 10a. (232 aa)    
Predicted Functional Partners:
LOC113007291-2
MOB family member 4, phocein.
   
 
 0.914
ccm2
CCM2 scaffold protein.
    
 
 0.907
slmap
Sarcolemma associated protein a.
    
 
 0.891
LOC113013057
Uncharacterized protein.
    
 
 0.871
LOC113036096
Protein phosphatase 2, regulatory subunit A, beta b.
    
 
 0.857
ENSACLP00000013574
CTTNBP2 N-terminal like b.
    
 
 0.848
LOC113021954
CTTNBP2 N-terminal like a.
    
 
 0.848
LOC113013165
Sarcolemma associated protein b.
    
 
 0.840
ENSACLP00000004817
Striatin interacting protein 2.
    
 
 0.800
strip1
Striatin interacting protein 1.
    
 
 0.800
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.